780.20: 1094 Session 2
Handouts: Mercurial example;
gnuplot mini-manual; gnuplot example; printouts of several codes.
Your goals for this session (in order of priority; you will
finish some in PS#1):
- Finish (some) leftover tasks from Session 1 (if any)
- Look at a round-off error demonstration with quadratic equations
- Try out Mercurial revision control
- Discuss a special-case problem to help understand summing
in different orders
- Debug sample codes
- Make some plots with gnuplot
- Assess different methods of calculating spherical Bessel functions
- Use the spherical Bessel function from
the Gnu Scientific Library (GSL) in a code
Please work in pairs and briefly answer questions asked here on this sheet.
The instructors will bounce around 1094 and answer questions (don't be
shy to ask about anything!).
You should go to your working directory (e.g., for cygwin go to
the shared disk with cd /cygdrive/z, see Session 1 for
download session02.zip from the 780 homepage and unzip it
in your directory.
(Possibly) Leftover Tasks from Session 1
You should finish or correct the following subtasks
from Session 1, which we will build on.
If you are correcting something, check
it with an instructor sometime during the class today.
- GNU/Linux Environment: Make sure that
you've correctly modified area.cpp
to calculate the volume of a sphere and verified that it works.
- Overflows, Underflows, and Machine Precision:
Complete part 2, modifying "precision.cpp" so that the
result for double precision is correct
(10e-12 is incorrect).
- Using a Makefile: Successfully complete part 3.
- Using the GSL Scientific Library:
Complete parts 1, 2, and 3.
Round-Off Errors with Quadratic Equations
This section assumes you have read the background notes for Session 2,
which describe round-off errors and the quadratic equation.
- Review the discussion about round-off errors and the quadratic
equation in the Session 2 notes with your partner.
Make sure you
go over the pseudo-code for the test case and
- Look at the code quadratic_equation_1a.cpp in an editor and/or
on the handout. It represents the pseudo-code as it has just been
typed in, mistakes and all.
Note that it is not indented consistently.
One way to
fix this is with the "indent" tool. Just type "indent
quadratic_equation_1a.cpp" at the command line
and then look at the code again. It will
have been indented automagically!
- Now try compiling with "make -f make_quadratic_equation_1a".
You should get a bunch of warnings and errors. Each one comes with
the line number of the error. Take each one in turn
and mark on the handout what you think the error is (you'll need to
identify the line numbers in your editor; ask an instructor if you
don't know how to turn them on).
Each warning is a clue to a mistake in the code
(such as a typo)! [One hint: "setprecision" is defined in the header
If you get stuck, quadratic_equation_1.cpp is the corrected version
(without the "a" after the "1"). List the errors here:
- Correct these errors and see that it compiles and runs.
Try a=1, b=2, c=0.1 and see that the roots differ. Which two
are the most accurate? (Hint: check the Session 2 notes.)
- Now look at quadratic_equation_2.cpp, which is the second
pass at the code. Check the comments for a description of changes.
(This code is printed on the same handout as 1 and 1a.)
Mark every C++ line on the printout that you don't understand
completely (it may be most of them!).
- Compile and run quadratic_equation_2.cpp, and
enter a=1, b=2, c=.1 again. The output is now more detailed
and an output file named "quadratic_eq.dat" is created.
We'll discuss outputting to a file more later; for now, this is an
example you can follow to do it on your own (there were also
examples in Session 1).
- Follow the "Plotting Data from a File with Gnuplot" handout
to duplicate the plot on the back. Try some of the extra commands,
including output to a postscript file. Print out the file
on the Smith1011s printer using
lpr -P //PHYPCS/smith1011s quadratic_eq.ps
in cygwin and
lpr -P smith1011s quadratic_eq.ps on Linux,
and hand it in at the end (all titles are not
necessary here, but will be in the future!).
- Is the plot qualitatively and
quantitatively consistent with the analysis in the notes? Explain
in a few sentences. [Hint: what does the slope tell you?]
A First Look at Mercurial
Work through the handout "Using Mercurial Locally", making a
repository from the session_02 files.
Summing in Different Orders (see Session 2 notes)
Here we consider another example of subtractive cancellation and how
computer math is not the same as formal math. Imagine we need
to sum the numbers 1/n from n=1 to n=N, where N is a large number.
We're interested in whether it makes any difference whether we sum
1 + 1/2 + 1/3 + ... + 1/N (summing up)
1/N + 1/(N-1) + ... + 1/2 + 1 (summing down)
In formal mathematics, of course, the answer are identical, but not
on a computer!
To help think about the sum up vs. sum down problem, it's useful to
think first about a simpler version. Suppose you want to numerically add
small numbers a = 5x10-8 to 1 (so the exact answer is 1.5).
For the first three questions, predict the answer before running
- If you add 1 + a + a + ... in single precision, what do you
expect to get for the total? (Hint: recall the discussion
of "machine precision.")
- If, instead, you add a + a + ... + 1 in single precision, do you
expect a different answer? Which will be closer to the exact
- If you repeat the exercise in double precision, what do you
expect will happen?
- Write a brief "pseudocode" here for a program that would compare
these two ways of summing.
Then look at the file order_of_summation1a.cpp in an editor
(also on a handout);
does it look like an
implementation of your pseudocode?
- In a terminal
window, use the makefile make_order_of_summation1a to try and compile it
("make -f make_order_of_summation1a").
Identify and fix the errors, until it
compiles and runs correctly (verify the results against the
comments in the file). Correct your answers to 1,2,3 if
necessary (and understand them!).
- Run indent on the file ("indent order_of_summation1a.cpp") and check that
it is now nicely formatted.
- Challenge: Predict the results for 108
additions (instead of 107):
Now change the code, and see if
your prediction is correct (or that you can explain it after the
Bessel 1: Making Another Plot with Gnuplot
The next three tasks (Bessel 1-3) build on the discussion of spherical
Bessel functions in the Session 2 notes.
Skim this discussion before going further.
- Copy make_area to make_bessel
and open make_bessel in an editor.
(If you are in the
you can use "cp ../session_01/make_area ." to create a new copy where
you are or
"cp ../session_01/make_area make_bessel" to make a copy directly; do you
understand what all the "."'s mean? If not, ask!)
Change all "area"'s to "bessel"'s.
(Can you do this all in one step with the editor?)
Run the makefile using "make -f make_bessel".
- If you run bessel.cpp,
you'll generate a data file "bessel.dat".
By looking at the code (and chapter 3), figure out what the columns
in the file mean. What Bessel function is being output?
What are the columns?
- Make a plot of the third column as a function of the first column
using gnuplot. (Use the example in the
handout as a guide. You might also find the "GNUPLOT Manual and
Tutorial" useful.) Try plotting BOTH the second and third columns
vs. the first column on the same plot (i.e., two curves).
Print out your plot.
Bessel 2: Error Assessment
- Modify the output statements in bessel.cpp to increase
the number of digits in the output (look back at previous
codes for clues how to do this).
- Modify the code bessel.cpp (give it another name)
to compare upward and downward recursion methods by adding
a new column to the output that calculates the relative
difference between the results for each x. We'll define the
relative difference of a and b as |a-b|/(|a|+|b|). Google to
find out how to take an absolute value in C++.
- Make an appropriate plot of the error vs. x and interpret the
different regions of the graph.
Bessel 3: Using the GSL Scientific Library (continued)
Make sure you have completed the GSL task from Session 1 before
- Modify bessel.cpp to also calculate the spherical Bessel function
using the GSL routine gsl_sf_bessel_jl for comparison. The GSL
documentation gives the usage of this function as:
Function: double gsl_sf_bessel_jl
(int l, double x)
"This routine computes the regular spherical Bessel function of order l,
j_l(x), for l >= 0
and x >= 0."
How does the accuracy of the downward recursion
routine in bessel.cpp compare to that of the GSL function?
(How can you tell?)
780.20: 1094 Session 2.
Last modified: 07:17 am, January 09, 2012.