*Handouts: Pang excerpt, pendulum power spectrum graphs,
printouts of ode_test_class.cpp and classes, multifit_test.cpp and
multimin_test.cpp.*

In this session,
we'll take a look at nonlinear least-squares
fitting with GSL.

*
Your goals for today:
*

- Take a quick look at some pendulum power spectra.
- Try out and extend the adaptive ode code with classes.
- Try out nonlinear minimization on a demonstration problem.
- Try out nonlinear least-squares fitting on a demonstration problem.

Please work in pairs (more or less). The instructors will bounce around 1094 and answer questions.

Look at the handout with the three rows of plots showing the time dependence of a pendulum on the left and the corresponding power spectrum on the right plotted in terms of frequency = 1/period.

- How can you most accurately determine the single frequency in the
first row from the graph on the left?

- Identify two of the frequencies in the second row.

- What is the characteristic of the power spectrum in the
third row that is consistent with a chaotic signal?

If you use tcsh rather than bash (type `echo $SHELL` to check),
then you want to include a `.cshrc.more` file in your
home directory rather than `.bashrc`.

- Edit
`cshrc.more`(no initial period) and look at the syntax. Keep what you want and copy to your home directory:`cp cshrc.more ~/.cshrc.more`(note the period in the final name). - The command
`source ~/.cshrc`will activate the changes. - Try the aliases! (Including the Session 8 Rsync exercise if you skipped it.)

The basic problem is to find a minimum of the scalar function f(xvec) [scalar means that the result of evaluating the function is just a number] where xvec = (x_0, x_1, ... , x_N) is an N-dimensional vector. This is a much harder problem for N > 1 than for N=1. The GSL library offers several algorithms; the best one to use depends on the problem to be solved. Therefore, it is useful to be able to switch between different choices to compare results. GSL makes this easy. Here we'll try a sample problem. For more details, see the online GSL manual under "Multidimensional Minimization".

The routines used here find *local*
minima only, and only one at a time.
They have no way of determining whether a minima is a global one or
not (we'll return to this point later).

- Look at the test code "multimin_test.cpp" and compare it to the
online GSL documentation under "Multidimensional Minimization" (there
is also a handout copy).
Identify the steps in the minimization process. What classes might
you introduce for this code?

- Compile and link the program with "make_multimin_test" and run it.
Your results may differ from what is in the comments of the code.
*Adjust the program so that your answer is good to 10*^{-6}accuracy. What is it that is found to that accuracy? (E.g., is it the positions of the minimum or something else?)

- [Bonus] Modify the function minimized so it is a function of three
variables (e.g., x, y, z), namely a three-dimensional
paraboloid with your choice of minimum. Change the code so that the
dimension of
`xvec`is a parameter. (Be sure to change ALL of the relevant functions.)*Verify that the minimum is still found.* *What algorithm is used initially to do the minimization? Modify the code to try a couple of the other algorithms. Which is "best" for this problem?*

- In Session 14, we'll return to try to
reproduce the results illustrated in Fig. 4.2 of the
Pang handout (stable structures of
Na
_{3}Cl_{2}^{+}and Na_{3}Cl_{3}).*Take a look at that now to see if you have any immediate questions.*

Using the nonlinear least-squares fitting routines from GSL is similar to using the GSL minimizer (and involves a special case of minimization). Your main job is to figure out from the online/handout documentation and this example from GSL (only slightly modified from what you will find in the documentation) how to use the routines. Here we briefly explore the sample problem, which also illustrates how to create a "noisy" (i.e., realistic) test case.

The model is that of a weighted exponential with a constant background:
` y = A e ^{-lambda t} + b `

You'll generate pseudo-data at a series of time steps t

- Take a look at the multifit_test.cpp
code (there is a printout), run it (compile
and link with make_multifit_test) and figure
out the flow of the program.
*What is the fitting function to be minimized? What role does sigma*_{i}play?

*What is the "Jacobian" for? (Remember to check the online documentation!)*

*Modify the code so that you can plot both the initial data and the fit curve using gnuplot. Look up how to add error bars for the data in gnuplot. [Hint: Try "help set style", "help errors", and "help plot errorbars" for some clues.] Attach a plot.*- The covariance matrix of the best-fit parameters can be used to
extract information about how good the fit is.
*How is it used in the program to estimate the uncertainties in the fit parameters? How do these uncertainties scale with the number of time-steps used in the fit? How do they scale with the magnitude of the noise?*(I.e., if you change the "amplitude" of the gaussian noise, how do the errors in the fit parameters change?)

- [Bonus: come back to this.] Modify the function by adding a fourth parameter and try to fit (and plot!) again. For example, you could change "A" to "A cos(omega t)" with omega another parameter. Your choice!

In Session 9, we took a quick look at `ode_test.cpp`, which
implemented the GSL adaptive differential equation solver on the
Van der Pol oscillator. Here we look at a rewrite that uses classes.

- The details of
`ode_test_class.cpp`and the`Ode`and`Rhs`classes are described in detail in the Session 10 notes. Look at the printout while you go through the notes. What questions do you have?

- Add two additional calls to
`evolve_and_print`so that all three initial conditions from Session 9, [x0=1.0, v0=0.0], [x0=0.1, v0=0.0], and [x0=-1.5, v0=2.0], are generated with the same run.*Did the three output files get generated? (You can try plotting to check correctness.)*

- Add another instance of the
`Rhs_VdP`class called`vdp_rhs_2`with mu=3 and generate results for the same initial conditions.*Plot these. Is it still an isolated attractor?* - [Bonus. Come back to this if you finish everything else.]
Add another class
`Rhs_Pendulum`that implements the pendulum differential equation with natural frequency omega0 and a driving force with amplitude f_ext and frequency omega_ext. (You will want to modify or replace`evolve_and_print`.)

furnstahl.1@osu.edu